Volume 8 Issue 6
Dec.  2012
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SU Tianfeng, JIANG Shigui, MA Zhiming, LI Xia. Structure and evolution of mitochondrial control regions in Evynnis cardinalis[J]. South China Fisheries Science, 2012, 8(6): 1-8. DOI: 10.3969/j.issn.2095-0780.2012.06.001
Citation: SU Tianfeng, JIANG Shigui, MA Zhiming, LI Xia. Structure and evolution of mitochondrial control regions in Evynnis cardinalis[J]. South China Fisheries Science, 2012, 8(6): 1-8. DOI: 10.3969/j.issn.2095-0780.2012.06.001
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Structure and evolution of mitochondrial control regions in Evynnis cardinalis

  • Key Lab. of South China Sea Fisheries Resources Exploitation & Utilization, Ministry of Agriculture; South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510300, China

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  • Received Date: April 27, 2012
  • Revised Date: June 10, 2012
    Graphical Abstract
    • Abstract

  • We determined the complete sequences of the mitochondrial DNA control regions in Evynnis cardinalis using long polymerase chain reaction (PCR), and aligned them by Clustal X with 9 related Sparidae sequences in GenBank. Several conserved sequence blocks were identified in the mitochondrial DNA control regions, including extended terminal associated sequences (ETAS), blocks of central domain (CSB-F, CSB-E, CSB-D, CSB-C, CSB-B, CSB-A) and conserved sequence blocks (CSB1, CSB2, CSB3). Taking Paralabrax clathratus and Verasper moseri as outgroups, the molecular phylogenetic trees of Sparidae were constructed based on neighbour-joining and maximum-parsimony methods, which reveal that Sparidae is a monophyletic group, and E.cardinalis should be grouped with Pagrus. Therefore, it is necessary to reevaluate the taxonomic status of Evynnis and Pagrus.

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  • [1]
    谢佳燕. 齐口裂腹鱼线粒体DNA控制区结构分析[J]. 动物学杂志, 2011, 46(2): 97-101. http://dwxzz.ioz.ac.cn/dwxb/article/abstract/20110214

    XIE Jiayan. Structure analysis of mtDNA control region in Schizothorax prenanti[J]. J Zool, 2011, 46(2): 97-101. (in Chinese) http://dwxzz.ioz.ac.cn/dwxb/article/abstract/20110214
    [2]
    SBIS E, TANZARIELLO F, REYES F, et al. Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and the functional and evolutionary implications[J]. Gene, 1997, 205(1/2): 125-140. doi: 10.1016/S0378-1119(97)00404-6
    [3]
    WALBERG M W, CLAYTON D A. Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA[J]. Nucleic Acids Res, 1981, 9(20): 5411-5421. doi: 10.1093/nar/9.20.5411
    [4]
    伍汉霖, 邵广昭, 赖春福. 拉汉世界鱼类名典[M]. 基隆: 台湾水产出版社, 1999: 7-977.

    WU Hanlin, SHAO Guangzhao, LAI Chunfu. Latin-Chinese dictionary of fishes names[M]. Keelung: The Sueichan Press, 1999: 7-977. (in Chinese)
    [5]
    成泰庆, 郑葆珊. 中国鱼类系统检索[M]. 北京: 科学出版社, 1987: 334-336.

    CHENG Taiqing, ZHENG Baoshan. Systematic synopsis of Chinese fishes[M]. Beijing: Science Press, 1987: 334-336. (in Chinese)
    [6]
    杨慧荣, 江世贵. 用RAPD技术探讨5种鲷科鱼类的亲缘关系[J]. 水产学报, 2006, 30(4): 469-474. doi: 10.3724/SP.J.1231

    YANG Huirong, JIANG Shigui. Study on genetic relationships of Sparidae by RAPD[J]. J Fish China, 2006, 30(4): 469-474. (in Chinese) doi: 10.3724/SP.J.1231
    [7]
    张殿昌, 邵燕卿, 苏天凤, 等. 二长棘犁齿鲷线粒体细胞色素b基因序列和分子系统发育分析[J]. 南方水产, 2007, 3(2): 1-7. https://www.schinafish.cn/article/id/8ae35a81-fc80-4d86-ae94-af2e722dc0ee

    ZHANG Dianchang, SHAO Yanqin, SU Tianfeng, et al. The sequence analysis of mitochondrial cytochrome b gene and molecular phylogeny of Parargyrops edita[J]. South China Fish Sci, 2007, 3(2): 1-7. (in Chinese) https://www.schinafish.cn/article/id/8ae35a81-fc80-4d86-ae94-af2e722dc0ee
    [8]
    邵爱华, 朱江, 史全良, 等. 暗纹东方鲀线粒体DNA控制区结构和系统发育分析[J]. 中国水产科学, 2007, 14(3): 352-360. doi: 10.3321/j.issn:1005-8737.2007.03.002

    SHAO Aihua, ZHU Jiang, SHI Quanliang, et al. Characterization and phylogenetic analysis of control region of mitochondrial genome from Takifugu fasciatus[J]. J Fish Sci China, 2007, 14(3): 352-360. (in Chinese) doi: 10.3321/j.issn:1005-8737.2007.03.002
    [9]
    张艳春, 孔晓瑜, 王忠明. 大口鳒线粒体DNA控制区结构和鲽形目鱼类的系统进化初步研究[J]. 热带海洋学报, 2010, 29(6): 71-78. https://lib.cqvip.com/Qikan/Article/Detail?id=37150763&from=Qikan_Article_Detail

    ZHANG Yanchun, KONG Xiaoyu, WANG Zhongming. Characterization of mitochondrial control region sequence of Psettodes erumei and phylogenetic analysis of Pleuronectiformes[J]. J Trop Oceanogr, 2010, 29 (6): 71-78. (in Chinese) https://lib.cqvip.com/Qikan/Article/Detail?id=37150763&from=Qikan_Article_Detail
    [10]
    张燕, 张鹗, 何舜平. 中国鲿科鱼类线粒体DNA控制区结构及其系统发育分析[J]. 水生生物学报, 2003, 27(5): 463-467. doi: 10.3321/j.issn:1000-3207.2003.05.004

    ZHANG Yan, ZHANG E, HE Shunping. Studies on the structure of the control region of the Bagridae in China and its phylogenetic significance[J]. Acta Hydrobiological Sinica, 2003, 27(5): 463-467. (in Chinese) doi: 10.3321/j.issn:1000-3207.2003.05.004
    [11]
    朱世华, 郑文娟, 邹记兴, 等. 鲹科鱼类线粒体DNA控制区结构及系统发育关系[J]. 动物学研究, 2007, 28(6): 606-614. doi: 10.3321/j.issn:0254-5853.2007.06.005

    ZHU Shihua, ZHENG Wenjuan, ZHOU Jixing, et al. Mitochondrial DNA control region structure and molecular phylogenetic relationship of Carangidae[J]. Zool Res, 2007, 28(6): 606-614. (in Chinese) doi: 10.3321/j.issn:0254-5853.2007.06.005
    [12]
    赫崇波, 曹杰, 刘卫东, 等. 圆斑星鲽线粒体基因组全序列结构及其进化[J]. 遗传, 2007, 29(7): 829-836. http://www.fishscichina.com/zgsckx/article/abstract/3863?st=article_issue

    HE Chongbo, CAO Jie, LIU Weidong, et al. Structure analysis of mtDNA control region of spotted halibut (Verasper variegatus) and its related species[J]. Hereditas, 2007, 29(7): 829-836. (in Chinese) http://www.fishscichina.com/zgsckx/article/abstract/3863?st=article_issue
    [13]
    柳淑芳, 吴仁协, 朱玲, 等. 小黄鱼(Larimichthys polyactis)线粒体基因组结构与特征[J]. 海洋与湖沼, 2010, 41(6): 885-894. https://lib.cqvip.com/Qikan/Article/Detail?id=37132376&from=Qikan_Search_Index

    LIU Shufang, WU Renxie, ZHU Ling, et al. Complete sequence and gene organization of mitochondrial DNA of the small yellow croaker Larimichthys polyactis[J]. Oceanologica et Limnologia Sinica, 2010, 41(6): 885-894. (in Chinese) https://lib.cqvip.com/Qikan/Article/Detail?id=37132376&from=Qikan_Search_Index
    [14]
    秦钦, 许志强, 边文冀, 等. 斑点叉尾线粒体DNA控制区结构和群体遗传多样性分析[J]. 淡水渔业, 2011, 41(4): 50-54.

    QIN Qin, XU Zhiqiang, BIAN Wenji, et al. Structure of mitochondrial DNA control region and population genetic diversity analysis of channel catfish (Ictalurus punctatus)[J]. Freshw Fish, 2011, 41(4): 50-54. (in Chinese)
    [15]
    荣朝振, 祖国掌, 胡建华, 等. 泥鳅线粒体DNA控制区结构分析及遗传多样性研究[J]. 南方水产科学, 2011, 7(5): 55-62. doi: 10. 3969/j. issn.2095 - 0780. 201 1. 05. 009

    RONG Chaozhen, ZU Guozhang, HU Jianhua, et al. Structure of mitochondrial DNA control region and genetic diversity of Misgurnus anguillicaudatus[J]. South China Fish Sci, 2011, 7(5): 55-62. (in Chinese) doi: 10. 3969/j. issn.2095 - 0780. 201 1. 05. 009
    [16]
    陆星, 梁日深, 陈竹, 等. 斜带髭鲷线粒体DNA控制区序列的结构分析[J]. 水生态学杂志, 2011, 32(6): 78-83. https://sstxzz.ihe.ac.cn/ch/reader/create_pdf.aspx?file_no=201107130151

    LU Xing, LIANG Rishen, CHEN Zhu, et al. Structure of mitochondrial control region sequence of Hapalogenys nitens[J]. J Hydroecol, 2011, 32(6): 78-83. (in Chinese) https://sstxzz.ihe.ac.cn/ch/reader/create_pdf.aspx?file_no=201107130151
    [17]
    苏天凤, 江世贵. 竹筴鱼属鱼类线粒体DNA控制区结构及其系统发育分析[J]. 南方水产科学, 2011, 7(1): 18-25. doi: 10.3969/j.issn.2095-0780.2011.01.003

    SU Tianfeng, JIANG Shigui. Structure and phylogenetic analysis of mitochondrial DNA control region of genus Trachurus[J]. South China Fish Sci, 2011, 7(1): 18-25. (in Chinese) doi: 10.3969/j.issn.2095-0780.2011.01.003
    [18]
    THOMPSON J D, GIBSON T J, PLEWNIAK F, et al. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools[J]. Nucleic Acids Res, 1997, 25(24): 4876-4882. doi: 10.1093/nar/25.24.4876
    [19]
    XIA Junhong, XIA Kuaifei, GONG Jinbo, et al. Complete mitochondrial DNA sequence, gene organization and genetic variation of control regions in Parargyrops edita[J]. Fish Sci, 2007, 73(5): 1042-1049. doi: 10.1111/j.1444-2906.2007.01434.x
    [20]
    SOUTHERN S O, SOUTHERN P J, DIZON A E. Molecular characterization of a cloned dolphin mitochondrial genome[J]. J Mol Evol, 1988, 28(1/2): 32-40. doi: 10.1007/BF02143495
    [21]
    ZHAO Jinliang, WANG Weiwei, LI Sifa, et al. Structure of the mitochondrial DNA control region of the Sinipercine fishes and their phylogenetic relationship[J]. Acta Genetica Sinica, 2006, 33(9): 793-799. doi: 10.1016/S0379-4172(06)60112-1
    [22]
    王登玉. 中华乌塘鳢线粒体DNA控制区结构分析与群体遗传学研究[D]. 厦门: 厦门大学, 2008: 27-43. 10.7666/d.y1444429

    WANG Dengyu. Length and sequence variation in mitochondrial DNA eontrol region and genetic structure of Bostrichthy sinesis[D]. Xiamen: Xiamen University, 2008: 27-43. (in Chinese) 10.7666/d.y1444429
    [23]
    周立石. 鳎亚目鱼类系统学关系及带纹条鳎线粒体DNA控制区结构的初步研究[D]. 青岛: 中国海洋大学, 2005: 50-59. 10.7666/d.y828458

    ZHOU Lishi. Pilot study for phylogenetic analysis of Soleoidei fishes and structure of Zebrias zebra mtDNA control region[D]. Qingdao: Ocean University of China, 2005: 50-59. (in Chinese) 10.7666/d.y828458
    [24]
    刘海林, 章群, 唐优良, 等. 黄渤海松江鲈鱼线粒体控制区结构与序列多态性分析[J]. 海洋通报, 2010, 29(3): 283-289. doi: 10.3969/j.issn.1001-6392.2010.03.008

    LIU Hailin, ZHANG Qun, TANG Youliang, et al. Structure and genetic diversity of mtDNA D-Loop sequences among Trachidermus fasciatus stocks in Yellow Sea and Bohai Sea of China[J]. Mar Sci Bull, 2010, 29(3): 283-289. (in Chinese) doi: 10.3969/j.issn.1001-6392.2010.03.008
    [25]
    张四明, 吴清江, 张亚平. 中华鲟(Acipenser sinensis)及相关种类的mtDNA控制区串联重复序列及其进化意义[J]. 中国生物化学与分子生物学, 2000, 16(4): 458-461. doi: 10.3969/j.issn.1007-7626.2000.04.008

    ZHANG Siming, WU Qingjiang, ZHANG Yaping. Tandem repeats of Chinese sturgeon (Acipenser sinensis) and related species and its significance in evolution[J]. Chin J Biochem Mol Biol, 2000, 16(4): 458-461. (in Chinese) doi: 10.3969/j.issn.1007-7626.2000.04.008
    [26]
    刘焕章. 鱼类线粒体DNA控制区的结构与进化: 以鳑鲏鱼类为例[J]. 自然科学进展, 2002, 12(3): 266-270. doi: 10.3321/j.issn:1002-008X.2002.03.008

    LIU Huanzhang. The structureand evolution of mitochondrial DNA control region of fish: a case study to bitterlings[J]. Prog Nat Sci, 2002, 12(3): 266-270. (in Chinese) doi: 10.3321/j.issn:1002-008X.2002.03.008
    [27]
    GUO Xinhong, LIU Shaojun, LIU Yun. Comparative analysis of the mitochondrial DNA control region in cyprinids with different ploidy level[J]. Aquaculture, 2003, 224(1/2/3/4): 25-38. doi: 10.1016/S0044-8486(03)00168-6
    [28]
    谭围, 郭昱嵩, 王中铎. 笛鲷鱼类的线粒体DNA控制区结构及其系统发育分析[J]. 海洋学报, 2010, 32(1): 139-145. https://xueshu.baidu.com/usercenter/paper/show?paperid=5813ee59fa665947e5122c401ecd6e58&site=xueshu_se&hitarticle=1

    TAN Wei, GUO Yusong, WANG Zhongduo. Structure of the mitochondrial DNA control region of snapper species and their phylogenetic relationship[J]. Acta Oceanologica Sinica, 2010, 32(1): 139-145. (in Chinese) https://xueshu.baidu.com/usercenter/paper/show?paperid=5813ee59fa665947e5122c401ecd6e58&site=xueshu_se&hitarticle=1
    [29]
    HE Chongbo, HAN Jiabo, GE Longli, et al. Sequence and organization of the complete mitochondrial genomes of spotted halibut (Verasper variegatus) and barfin flounder (Verasper moseri)[J]. DNA Seq, 2008, 19(3): 246-55. doi: 10.1080/10425170701563303
    [30]
    江世贵, 刘红艳, 苏天凤, 等. 4种鲷科鱼类的线粒体细胞色素b基因序列及分子系统学分析[J]. 中国水产科学, 2003, 10(3): 184-188. https://www.doc88.com/p-8176141285829.html

    JIANG Shigui, LIU Hongyan, SU Tianfeng, et al. Molecular phylogeny of mitochondrial cytochrome b gene sequences from four Sparidae fishes[J]. J Fish Sci China, 2003, 10(3): 184-188. (in Chinese) https://www.doc88.com/p-8176141285829.html
    [31]
    XIA Junhong, XIA Kuaifei, JIANG Shigui. Complete mitochondrial DNA sequence of the yellowfin seabream Acanthopagrus latus and a genomic comparison among closely related sparid species[J]. Mitochondrial DNA, 2008, 19(4): 385-393. doi: 10.1080/19401730802350998
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