Volume 12 Issue 4
Aug.  2016
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LI Min, LI Yufang, ZHANG Peng, CHEN Zuozhi. Analysis of population genetic structure of bullet tuna(Auxis rochei) in the South China Sea based on mitochondrial control region sequences[J]. South China Fisheries Science, 2016, 12(4): 88-95. DOI: 10.3969/j.issn.2095-0780.2016.04.011
Citation: LI Min, LI Yufang, ZHANG Peng, CHEN Zuozhi. Analysis of population genetic structure of bullet tuna(Auxis rochei) in the South China Sea based on mitochondrial control region sequences[J]. South China Fisheries Science, 2016, 12(4): 88-95. DOI: 10.3969/j.issn.2095-0780.2016.04.011
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Analysis of population genetic structure of bullet tuna(Auxis rochei) in the South China Sea based on mitochondrial control region sequences

  • Key Lab. of South China Sea Fishery Resources Exploitation & Utilization, Ministry of Agriculture; Scientific Observing and Experimental Station of South China Sea Fishery Resources & Environments, Ministry of Agriculture; South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510300, China

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  • Received Date: April 12, 2016
  • Revised Date: May 12, 2016
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    • Abstract

  • Based on hypervariable region of mitochondrial control region (D-loop) sequences, we examined the population genetic structure of the bullet tuna (Auxis rochei) collected from seven locations between 5°N to 21°N in the South China Sea. A total of 185 haplotypes were defined from 201 individuals of fishes. The genetic diversity analysis shows that the samples of A.rochei from the seven locations in the South China Sea possessed quite high haplotype diversity (0.958 2~1.000 0) and high nucleotide diversity (0.034 327~0.041 235). The neighbor-joining tree for D-loop haplotypes reveals no significant genealogical clades of the fish samples corresponding to the sampling locations. Analyses of molecular variance and pairwise FST suggest most of the genetic variation (98.33%) was attributed to variability within populations. A high rate of gene flow between different populations implies a panmixia for A.rochei in the South China Sea. Both mismatch distribution analysis and neutrality tests indicate a late Pleistocene expansion in A.rochei. The results demonstrate that A.rochei in the South China Sea belong to the same population with high genetic diversity. Thus, a single-stock management regime can be supported in fishery management.

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  • [1]
    LAIKRE L, PALM S, RYMAN N. Genetic population structure of fishes: implications for coastal zone management[J]. Ambio, 2005, 34(2): 111-119. doi: 10.1579/0044-7447-34.2.111
    [2]
    MCHICH R, CHAROUKI N, AUGER P, et al. Optimal spatial distribution of the fishing effort in a multi fishing zone model[J]. Ecol Model, 2006, 197(3/4): 274-280.
    [3]
    LOESCHCKE V, TOMIUK J, JIAN S K, et al. Conservation genetics[M]. Basel: Birkhauser Veriag, 1994: 37-53.
    [4]
    COLLETTE B B, NAUEN C E. FAO species catalogue, vol. 2. Scombrids of the world. An annotated and illustrated catalogue of tunas, mackerels, bonitos, and related species known to date[M]. FAO Fisheries Synopsis, 1983, 125: 1-137.
    [5]
    FROESE R, PAULY D. FishBase[DB/OL]. [2016-01-25]. http://www.fishbase.se/summary/Auxis-rochei.html.
    [6]
    FAO. Global production statistics 1950-2014, frigate and bullet tunas[R]. Rome: FAO, 2015.
    [7]
    晏磊, 张鹏, 杨吝, 等. 2011年春季南海中南部海域灯光罩网渔业渔获组成的初步分析[J]. 南方水产科学, 2014, 10(3): 97-103. doi: 10.3969/j.issn.2095-0780.2014.03.015
    [8]
    张鹏, 曾晓光, 杨吝, 等. 南海区大型灯光罩网渔场渔期和渔获组成分析[J]. 南方水产科学, 2013, 9(3): 74-79. doi: 10.3969/j.issn.2095-0780.2013.03.012
    [9]
    张鹏, 张俊, 李渊, 等. 秋季南海中南部海域的一次灯光罩网探捕调查[J]. 南方水产科学, 2016, 12(2): 67-74. doi: 10.3969/j.issn.2095-0780.2016.02.010
    [10]
    张仁斋. 圆舵鲣仔、稚鱼的形态特征和产卵期[J]. 海洋水产研究, 1984, 7 (6): 79-84.
    [11]
    张玉玲. 圆舵鲣的生物学和渔业[J]. 动物学杂志, 1999, 34(3): 44-47.
    [12]
    江素菲, 王德明. 闽南-台湾浅滩渔场金枪鱼类仔鱼的分布和产卵期[J]. 厦门大学学报(自然科学版), 1986, 25(4): 476-483.
    [13]
    童铃, 金毅, 徐坤华, 等. 3种鲣鱼背部肌肉的营养成分分析及评价[J]. 南方水产科学, 2014, 10(5): 51-59. doi: 10.3969/j.issn.2095-0780.2014.05.008
    [14]
    李敏, 张鹏, 李玉芳, 等. 南海扁舵鲣种群遗传结构和遗传多样性评价[J]. 南方水产科学, 2015, 11(5): 82-89. doi: 10.3969/j.issn.2095-0780.2015.05.010
    [15]
    HALL T A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT [J]. Nucl Acids Symp, 1999, 41: 95-98.
    [16]
    TAMURA K, STECHER G, PETERSON D, et al. MEGA6: molecular evolutionary genetics analysis Version 6.0[J]. Mol Biol Evol, 2013, 30(12): 2725-2729.
    [17]
    POSADA D, CRANDALL K A. MODELTEST: testing the model of DNA substitution[J]. Bioinformatics (Oxford, England), 1998, 14(9): 817-818.
    [18]
    LIBRADO P, ROZAS J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data[J]. Bioinformatics (Oxford, England), 2009, 25(11): 1451-1452.
    [19]
    EXCOFFIER L, LISCHER H E. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows[J]. Mol Ecol Resour, 2010, 10(3): 564-567.
    [20]
    EXCOFFIER L, SMOUSE P E, QUATTRO J M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data[J]. Genetics, 1992, 131(2): 479-491.
    [21]
    TAMURA K, NEI M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees[J]. Mol Biol Evol, 1993, 10(3): 512-526.
    [22]
    EXCOFFIER L. Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model[J]. Mol Ecol, 2004, 13(4): 853-864.
    [23]
    RAY N, CURRAT M, EXCOFFIER L. Intra-deme molecular diversity in spatially expanding populations[J]. Mol Biol Evol, 2003, 20(1): 76-86.
    [24]
    HARPENDING H C. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution[J]. Hum Biol, 1994, 66(4): 591-600.
    [25]
    RAMOS-ONSINS S E, ROZAS J. Statistical properties of new neutrality tests against population growth[J]. Mol Biol Evol, 2002, 19(12): 2092-2100.
    [26]
    TAJIMA F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism[J]. Genetics, 1989, 123(3): 585-595.
    [27]
    FU Y X. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection[J]. Genetics, 1997, 147(2): 915-925.
    [28]
    ROGERS A R, HARPENDING H. Population growth makes waves in the distribution of pairwise genetic differences[J]. Mol Biol Evol, 1992, 9(3): 552-569.
    [29]
    LEE W J, CONROY J, HOWELL W H, et al. Structure and evolution of teleost mitochondrial control regions[J]. J Mol Evol, 1995, 41(1): 54-66.
    [30]
    熊丹, 李敏, 陈作志, 等. 南海短尾大眼鲷的种群遗传结构分析[J]. 南方水产科学, 2015, 11(2): 27-34. doi: 10.3969/j.issn.2095.0780.2015.02.004
    [31]
    ZHANG J B, CAI Z P, HUANG L G. Population genetic structure of crimson snapper Lutjanus erythropterus in East Asia, revealed by analysis of the mitochondrial control region[J]. ICES J Mar Sci, 2006, 63(4): 693-704.
    [32]
    HAN Z Q, LI Y Z, CHEN G B, et al. Population genetic structure of coral reef species Plectorhinchus flavomaculatus in South China Sea[J]. Afr J Biotechnol, 2008, 7(11): 1774-1781.
    [33]
    FRANKHAM R, BALLOU J D, BRISCOE D A. Introduction to conservation genetics[M]. Cambridge: Cambridge University Press, 2002: 78-104.
    [34]
    WANG P. Response of western Pacific marginal seas to glacial cycles: paleoceanographic and sedimentological features[J]. Mar Geol, 1999, 156(1): 5-39.
    [35]
    IMBRIE J, BOYLE E A, CLEMENS S C, et al. On the structure and origin of major glaciation cycles, 1. Linear responses to Milankovitch forcing[J]. Paleoceanography, 1992, 7(6): 701-738.
    [36]
    WANG P. Response of western Pacific marginal seas to glacial cycles: paleoceanographic and sedimentological features[J]. Mar Geol, 1999, 156(1): 5-39.
    [37]
    FREELAND J R. Molecular ecology[M]. Chichester: John Wiley & Sons Ltd., 2005: 112-116.
    [38]
    WRIGHT S. The genetical structure of populations[J]. Annals of Eugenics, 1951, 15(4): 323-354.
    [39]
    WRIGHT S. Evolution and the genetics of population: variability within and among Natural Population [M]. Chicago: University of Chicago Press, 1978: 79-103
    [40]
    GRANT W S, BOWEN B W. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation[J]. J Hered, 1998, 89(5): 415-426.
    [41]
    HEWITT G. The genetic legacy of the Quaternary ice ages[J]. Nature, 2000, 405(6789): 907-913.
    [42]
    PALUMBI S R. Genetic divergence, reproductive isolation, and marine speciation[J]. Annu Rev Ecol Syst, 1994, 25: 547-572.
    [43]
    陈真然, 魏淑珍. 南海东北部海域夏季浮性鱼卵和仔稚鱼的种类组成及其分布特征[C]//南海海洋生物研究论文集(一). 北京: 海洋出版社, 1983: 192-198.
    [44]
    张仁斋. 西沙群岛附近海区金枪鱼类仔稚鱼的调查研究报告[J]. 水产学报, 1981, 5(4): 301-315.
    [45]
    陈真然, 魏淑珍. 南海中部海域金枪鱼类仔稚鱼的分布[J]. 水产学报, 1981, 4(1): 41-47.
    [46]
    苏纪兰. 南海环流动力机制研究综述[J]. 海洋学报(中文版), 2005, 27(6): 1-8.
    [47]
    苏纪兰. 中国近海水文[M]. 北京: 海洋出版社, 2005: 1-367.
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