Volume 7 Issue 1
Feb.  2011
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SU Tianfeng, JIANG Shigui. Structure and phylogenetic analysis of mitochondrial DNA control region of genus Trachurus[J]. South China Fisheries Science, 2011, 7(1): 18-25. DOI: 10.3969/j.issn.2095-0780.2011.01.003
Citation: SU Tianfeng, JIANG Shigui. Structure and phylogenetic analysis of mitochondrial DNA control region of genus Trachurus[J]. South China Fisheries Science, 2011, 7(1): 18-25. DOI: 10.3969/j.issn.2095-0780.2011.01.003
shu

Structure and phylogenetic analysis of mitochondrial DNA control region of genus Trachurus

  • South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510300, China

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  • Received Date: July 07, 2010
  • Revised Date: July 29, 2010
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    • Abstract

  • We used PCR to amplify the complete sequences of mitochondrial DNA (mtDNA) control region of 2 Trachurus japonicus from South China Sea, and then aligned them by Clustal X with 8 other species of the genus Trachurus from GenBank. According to the alignment and structure comparison, the mtDNA control region of the genus Trachurus can be divided into 3 domains: termination associated sequence domain (TAS), central conserved domain (CD) and conserved sequence block domain (CSB).We identified 2 termination-associated sequences (TAS) and 3 conserved blocks (CSB-F, CSB-E and CSB-D) in CD domain as well as 3 conserved sequence blocks (CSB-1, CSB-2 and CSB-3) in CSB domain. Taking Siniperca chuatsi as outgroup, the molecular phylogenetic relationship among 9 Carangidae was analyzed using neighbor-joining (NJ) method and maximum parsimony method in MEGA 4.0. Results show that the genus Trachurus fishes belong to a monophyletic group: T.picturatus, T.murphyi, T.symmetricus, T.capensis and T.Trachurus gather into one cluster; T.mediterraneus, T.declivis, T.japonicus and T.novaezelandiae gather another. T.japonicus does not form into an independent group but is merged into T.declivis and T.novaezelandiae. Thus, it is suggested that T.japonicus and T.novaezelandiae may be 2 synonyms.

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