ZHAO Yanhua, OU Youjun, WEN Jiufu, LI Jia'er, ZHOU Hui. Analysis of genetic diversity of Bahaba flavolabiata based on microsatellite markers[J]. South China Fisheries Science, 2019, 15(4): 127-132. DOI: 10.12131/20180261
Citation: ZHAO Yanhua, OU Youjun, WEN Jiufu, LI Jia'er, ZHOU Hui. Analysis of genetic diversity of Bahaba flavolabiata based on microsatellite markers[J]. South China Fisheries Science, 2019, 15(4): 127-132. DOI: 10.12131/20180261

Analysis of genetic diversity of Bahaba flavolabiata based on microsatellite markers

More Information
  • Received Date: November 25, 2018
  • Revised Date: March 26, 2019
  • Accepted Date: April 25, 2019
  • Available Online: May 06, 2019
  • We examined the genetic diversity of 19 Bahaba flavolabiata samples collected from the Pearl River estuary based on microsatellite markers, so as to provide references for the identification of its germplasm resources and future breeding. The results show that the number of alleles (Na) in each of the 29 microsatellite loci was 2−7, with a total number of 121 alleles. The average number of alleles in each locus was 4.17. The effective number of alleles (Ne) was 1.060 6−6.056 1, with a sum of 85.205 0. The average values of the observed heterozygosity (Ho) and the expected heterozygosity (He) were 0.659 3 and 0.597 3, respectively. The value of polymorphism information content (PIC) was 0.055 5−0.813 7, with an average of 0.542 3, and 19 loci showed high polymorphism. Five loci deviated significantly from the Hardy-Weinberg equilibrium (corrected P≤0.036). The allelic richness (Rs) was 2−6.976, with a sum of 119.638. The genetic diversity (GD) was 0.059−0.856. It is suggested that most of the SSR loci developed in this study are highly polymorphic, and the genetic diversity of B. flavolabiata population is at a higher level.

  • [1]
    朱元鼎, 罗云林, 伍汉霖. 中国鱼类专著集[M]. 上海: 上海科学技术出版社, 1991: 40-41.
    [2]
    区又君, 廖锐, 李加儿, 等. 野生黄唇鱼Bahaba flavolabiata肌肉和鳔营养成分的分析与评价[J]. 海洋学报(中文版), 2010, 32(3): 113-120.
    [3]
    BABAEI H, ZEINALIAN M, EMAMI M H, et al. Simplified microsatellite instability detection protocol provides equivalent sensitivity to robust detection strategies in Lynch syndrome patients[J]. Cancer Biol Med, 2017, 14(2): 142-150. doi: 10.20892/j.issn.2095-3941.2016.0091
    [4]
    YAMAMOTO H, ADACHI Y, TANIGUCHI H, et al. Interrelationship between microsatellite instability and microRNA in gastrointestinal cancer[J]. World J Gastroenterol, 2012(22): 2745-2755.
    [5]
    孙成飞, 叶星, 董浚键, 等. 罗氏沼虾6个养殖群体遗传多样性的微卫星分析[J]. 南方水产科学, 2015, 11(2): 20-26. doi: 10.3969/j.issn.2095-0780.2015.02.003
    [6]
    杨兵, 林琳, 李纯厚, 等. 基于高通量测序的二长棘鲷微卫星标记开发与评价[J]. 南方水产科学, 2015, 11(4): 116-120. doi: 10.3969/j.issn.2095-0780.2015.04.017
    [7]
    孔杰, 石婧, 向燕, 等. 基于微卫星标记的养殖施氏鲟亲鱼群体遗传多样性[J]. 贵州农业科学, 2015, 43(12): 119-122. doi: 10.3969/j.issn.1001-3601.2015.12.031
    [8]
    袁文成. 基于转录组测序的翘嘴鳜微卫星标记的开发及MHC classI基因的克隆表达[D]. 苏州: 苏州大学, 2015: 12-28.
    [9]
    龚诗琦, 王志勇, 肖世俊, 等. 黄姑鱼转录组SSR的开发与验证[J]. 集美大学学报(自然科学版), 2016, 21(4): 241-246. doi: 10.3969/j.issn.1007-7405.2016.04.001
    [10]
    EXCOFFIER L, LISCHER H E. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows[J]. Mol Ecol Resour, 2010, 10(3): 564-567. doi: 10.1111/men.2010.10.issue-3
    [11]
    ROUSSET F. GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux[J]. Mol Ecol Resour, 2008, 8(1): 103-106. doi: 10.1111/j.1471-8286.2007.01931.x
    [12]
    RICE W E. Analyzing tables of statistical tests[J]. Evolution, 1989, 43(1): 223-225. doi: 10.1111/evo.1989.43.issue-1
    [13]
    李小芳, 程晓凤, 王生, 等. 鲢微卫星标记的荧光多重PCR体系建立及其应用[J]. 农业生物技术学报, 2012, 20(7): 822-830. doi: 10.3969/j.issn.1674-7968.2012.07.013
    [14]
    苗贵东. 半滑舌鳎微卫星标记开发、应用及遗传连锁图谱的构建[D]. 青岛: 中国海洋大学, 2010: 51-62.
    [15]
    李佳凯, 王志勇, 韦信键, 等. 大黄鱼微卫星多重PCR体系的建立及其应用[J]. 水产学报, 2014, 38(4): 470-475.
    [16]
    FU J J, SHEN Y B, XU X Y, et al. Multiplex microsatellite PCR sets for parentage assignment of grass carp (Ctenopharyngodon idella)[J]. Aquacult Int, 2013, 21(6): 1195-1207. doi: 10.1007/s10499-013-9623-z
    [17]
    LIU T, LI Q, SONG J L, et al. Development of genomic microsatellite multiplex PCR using dye-labeled universal primer and its validation in pedigree analysis of Pacific oyster (Crassostrea gigas)[J]. J Ocean Univ China, 2017, 16(1): 151-160. doi: 10.1007/s11802-017-3121-2
    [18]
    WANG Y K, ZHAO J, LI W, et al. Development of a multiplex microsatellite PCR assay based on microsatellite markers for the mud carp, Cirrhinus molitorella[J]. J World Aquacult Soc, 2016, 47(2): 277-286. doi: 10.1111/jwas.2016.47.issue-2
    [19]
    YOON M Y, MOE K T, KIM D Y, et al. Genetic diversity and population structure analysis of strawberry (Fragaria × ananassa Duch.) using SSR markers[J]. Electron J Biotechn, 2012, 15(2): 1-16.
    [20]
    BANERJEE S, DAS M, MIR R R, et al. Assessment of genetic diversity and population structure in a selected germplasm collection of 292 jute genotypes by microsatellite (SSR) markers[J]. Mol Plant Breed, 2012, 3(2): 11-25.
    [21]
    SOUZA I, SOUZA V, LIMA P. Molecular characterization of Platonia insignis Mart. ("Bacurizeiro") using inter simple sequence repeat (ISSR) markers[J]. Mol Biol Rep, 2013, 40(5): 3835-3845. doi: 10.1007/s11033-012-2462-6
    [22]
    徐艳. 橄榄蛏蚌微卫星标记开发及群体遗传多样性分析[D]. 武汉: 华中农业大学, 2014: 19-37.
    [23]
    NICAL K M, YOUNG W P, DANZMANN R G. A consolidated linkage map for rainbow trout[J]. Anim Genet, 2003, 34(2): 102-115. doi: 10.1046/j.1365-2052.2003.00957.x
    [24]
    梁利群, 常玉梅, 董崇智, 等. 微卫星DNA标记对乌苏里江哲罗鱼遗传多样性的分析[J]. 水产学报, 2004, 28(3): 241-244.
  • Related Articles

    [1]ZHUANG Menghao, FU Shengli, YAO Tuo, LU Jie, JIANG Haoyi, WANG Yuxiang, HAO Yaotong, YE Lingtong. Perkinsus spp. infections between cultured and wild oysters Crassostrea hongkongensis and Saccostrea mordax[J]. South China Fisheries Science, 2024, 20(6): 169-175. DOI: 10.12131/20240159
    [2]LUO Hui, FANG Di'an, HE Miao, MAO Chengcheng, KUANG Zhen, QI Hongfang, XU Dongpo. Genetic diversity and population structure of Gymnocypris przewalskii based on SNP markers[J]. South China Fisheries Science, 2023, 19(1): 86-96. DOI: 10.12131/20220091
    [3]HUANG Xiaoshuai, XU Yu, HU Xiaojuan, XU Wujie, SU Haochang, WEN Guoliang, YANG Keng, CAO Yucheng. Genetic diversity analysis of first filial generation of seven introduced Litopenaeus vannamei populations using microsatellite DNA markers[J]. South China Fisheries Science, 2019, 15(1): 54-62. DOI: 10.12131/20180135
    [4]DONG Zaijie, LIU Nian, FU Jianjun, ZHU Wenbin, WANG Lanmei, SU Shengyan. Genetic analysis for six wild and selection populations of common carp (Cyprinus carpio) using microsatellites[J]. South China Fisheries Science, 2018, 14(4): 46-55. DOI: 10.3969/j.issn.2095-0780.2018.04.006
    [5]DONG Zaijie, LIU Nian, ZHU Wenbin, FU Jianjun, WANG Lanmei, LI Jianguang, YANG Xing. Genetic analysis of Qingshui River common carp (Cyprinus carpio) based on microsatellite markers and morphologic traits[J]. South China Fisheries Science, 2018, 14(1): 1-8. DOI: 10.3969/j.issn.2095-0780.2018.01.001
    [6]LI Min, LI Yufang, ZHANG Peng, CHEN Zuozhi. Analysis of population genetic structure of bullet tuna(Auxis rochei) in the South China Sea based on mitochondrial control region sequences[J]. South China Fisheries Science, 2016, 12(4): 88-95. DOI: 10.3969/j.issn.2095-0780.2016.04.011
    [7]SU Tian-feng, XIONG Xiao-fei, JIANG Shi-gui, HUANG Jian-hua, ZHOU Fa-lin, XIA Jun-hong. Microsatellite analysis of genetic relationship among 7 full-sib families of Penaeus monodon[J]. South China Fisheries Science, 2010, 6(6): 1-7. DOI: 10.3969/j.issn.1673-2227.2010.06.001
    [8]LIU De-jing, ZHU Shan-yang. Study of morphological difference of Coelomactra antiquata in Fujian and Jiangsu coasts[J]. South China Fisheries Science, 2010, 6(2): 29-34. DOI: 10.3969/j.issn.1673-2227.2010.02.005
    [9]DU Bo, GONG Shiyuan, TONG Xin, HUANG Guiju, YU Dahui. Genetic variation of hatchery-produced populations of Haliotis discus hannai and H.discus discus in southern China based on microsatellite DNA[J]. South China Fisheries Science, 2007, 3(6): 22-29.
    [10]JIANG Yongjie, ZHOU Falin, HUANG Jianhua, MA Zhiming, JIANG Shigui. Analysis on genetic diversity of mtDNA control region sequences of the wild population of Peneanus monodon from Shenzhen′s sea area[J]. South China Fisheries Science, 2006, 2(1): 54-57.
  • Cited by

    Periodical cited type(23)

    1. 冯元泰,史荣君,李俊伟,区又君,齐占会,黄洪辉,贾旭颖. 不同日龄四指马鲅幼鱼肠道结构和菌群组成变化分析. 南方水产科学. 2025(01): 153-163 . 本站查看
    2. 吴子宜,赖文杰,邹振江,宋亚康,黄舜梅,汤胜亮,卢丹琪,张勇. 四指马鲅热休克蛋白70基因(HSP70)表达分析. 海南热带海洋学院学报. 2024(02): 1-10+37 .
    3. 段国庆,周华兴,汪焕,凌俊,胡玉婷,潘庭双,杨敏,邬凌云,江河. 60日龄瓦氏黄颡鱼选育群体形态性状对体重的影响分析. 安徽农业大学学报. 2023(01): 78-85 .
    4. 江梁正,王珺,区又君,周文礼,温久福,朱长波,李俊伟,陈朝. 2种盐度池塘养殖四指马鲅的肌肉营养组成分析. 中国渔业质量与标准. 2023(02): 11-17 .
    5. 田田. 人工养殖斑鳜(Siniperca scherzeri)形态性状与体质量的相关性研究. 水产学杂志. 2023(03): 68-74 .
    6. 陈爱华,董义超,吕曼,李泉城,李蒙,石英,刘明. 墨瑞鳕幼鱼形态性状对体质量通径分析及生长曲线拟合. 淡水渔业. 2023(05): 61-67 .
    7. 周胜杰,于刚,马振华. 养殖波纹唇鱼雌鱼形态性状对体质量的相关性及通径分析. 海洋科学. 2023(07): 44-52 .
    8. 余家旺,王耀嵘,林星桦,沈奕君,李广丽,黄洋,朱春华,田昌绪. 12月龄多鳞鱚形态性状对体质量的影响. 广东海洋大学学报. 2022(01): 137-143 .
    9. 王晓龙,李莉,王雪,菅玉霞,高凤祥,郭文,宋宗诚,岳新璐,胡发文. 6月龄斑头鱼形态性状与体质量的相关性和通径分析. 渔业研究. 2022(01): 52-59 .
    10. 方伟,陈明强,李有宁,马振华,赵旺,温为庚,邓正华,于刚,王雨. 凸加夫蛤(Gafrarium tumidum)形态性状对体质量性状的相关性及通径分析. 中国渔业质量与标准. 2022(02): 47-53 .
    11. 袁岩聪,何航,刘瑛,田庆兵,罗辉,章杰. 不同营养型水库对鳙形态性状和风味物质的影响. 淡水渔业. 2022(03): 91-97 .
    12. 李俊伟,罗志平,区又君,李加儿,胡瑞萍,温久福. 不同规格黄鳍鲷的形态性状与体质量的相关性研究. 生态科学. 2022(04): 9-15 .
    13. 闫卉果,董智玲,李雨,马婷婷,罗辉,叶华,何文平. 基于通径分析和灰色关联分析岩原鲤形态特征与体质量的关系. 西南大学学报(自然科学版). 2022(05): 74-81 .
    14. 虞为,林黑着,马振华,吴洽儿,陈雪晴,杨育凯,黄小林,黄忠,赵旺,李涛,周传朋. 4月龄豹纹鳃棘鲈形态性状对体质量的影响分析. 南方水产科学. 2022(06): 146-151 . 本站查看
    15. 方伟,周胜杰,赵旺,杨蕊,胡静,于刚,马振华. 黄鳍金枪鱼5月龄幼鱼形态性状对体质量的相关性及通径分析. 南方水产科学. 2021(01): 52-58 . 本站查看
    16. 周胜杰,杨蕊,于刚,吴洽儿,马振华. 青干金枪鱼和小头鲔循环水养殖生长研究. 水产科学. 2021(03): 339-346 .
    17. 吴新燕,梁宏伟,罗相忠,沙航,邹桂伟. 不同月龄长丰鲢形态性状对体质量的影响. 南方水产科学. 2021(03): 62-69 . 本站查看
    18. 牟恩镟,申屠琰,熊玉凤,朱卫东,王志铮. 池塘专养模式下中华鳖养成品形态性状对体质量和净体质量的影响效应. 浙江海洋大学学报(自然科学版). 2021(01): 22-28+79 .
    19. 牛莹月,罗志平,区又君,蓝军南,温久福,李加儿,周慧. 不同盐度对四指马鲅幼鱼存活及鳃组织形态变化的影响. 南方农业学报. 2021(06): 1719-1726 .
    20. 樊佳佳,马冬梅,朱华平,黄樟翰,黄剑华,李辉安. F_5代禾花鲤形态性状对体质量的影响. 广东农业科学. 2021(08): 124-130 .
    21. 王雅丽,王语同,孙晶,卢运超,陈天楠,王于众,舒锐,吴丛迪,胡鲲. 可控式集装箱养殖模式对乌鳢营养组成、组织形态及肠道菌群的影响. 海洋渔业. 2021(05): 573-585 .
    22. 童立豪,谭凡民,罗砚,倪孔平. 红树林人工湿地生态养殖黄鳍鲷形态性状对体质量的影响. 广西科学院学报. 2021(03): 248-255 .
    23. 蓝军南,区又君,温久福,李俊伟,牛莹月,李加儿. 四指马鲅性逆转过程初步研究. 南方水产科学. 2020(06): 67-74 . 本站查看

    Other cited types(7)

Catalog

    Recommendations
    牡蛎酶解产物对糖皮质激素诱导骨质疏松大鼠的改善作用
    马文语 et al., 南方水产科学, 2025
    不同脱腥方法对薛氏海龙肽粉的脱腥效果比较
    陈茂森 et al., 南方水产科学, 2025
    Lh原油和0# 柴油乳化液对凡纳滨对虾肝胰腺抗氧化酶活性及相关功能基因表达的影响
    沈楚焰 et al., 南方水产科学, 2025
    抗副溶血弧菌卵黄抗体制备及其与不同血清型菌株交叉反应研究
    陈静妮 et al., 南方水产科学, 2024
    湿磨辅助制备淀粉-脂质复合物及其结构和性能研究
    DONG Ying et al., JOURNAL OF HENAN UNIVERSITY OF TECHNOLOGY(NATURAL SCIENCE EDITION), 2023
    Bmscs来源的外泌体mir-515-5p可下调tlr4/nlrp3通路抑制ra-fls
    蔡东峰 et al., 遵义医科大学学报, 2025
    2d mon1.2-rgo stacked heterostructures enabled water state modification for highly efficient interfacial solar evaporation
    Yu, Huimin et al., ADVANCED FUNCTIONAL MATERIALS, 2023
    Alkbh5 activates fak signaling through m6a demethylation in itgb1 mrna and enhances tumor-associated lymphangiogenesis and lymph node metastasis in ovarian cancer
    Sun, Rui et al., THERANOSTICS, 2023
    Astaxanthin alleviates hepatic lipid metabolic dysregulation induced by microcystin-lr
    TOXINS, 1905
    Effects of different forms of statins on lipid profile in hyperlipidemic patients
    INTERNATIONAL JOURNAL OF PHARMACOLOGY, 2023
    Powered by
    Article views (4917) PDF downloads (76) Cited by(30)
    Related

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return