Chromosome-level genome and characteristic analysis of <i>Platax teira</i>

OUYANG Yan; PAN Jinmin; XIAN Lin; LIU Baosuo; GUO Huayang; Zhu Tengfei; ZHANG Nan; ZHU Kecheng; ZHANG Dianchang

doi:10.12131/20240112

Volume 20 Issue 6

Dec. 2024

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South China Fisheries Science > 2024 > 20(6): 31-42. > DOI: 10.12131/20240112

OUYANG Yan, PAN Jinmin, XIAN Lin, LIU Baosuo, GUO Huayang, Zhu Tengfei, ZHANG Nan, ZHU Kecheng, ZHANG Dianchang. Chromosome-level genome and characteristic analysis of Platax teira[J]. South China Fisheries Science, 2024, 20(6): 31-42. DOI: 10.12131/20240112

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Chromosome-level genome and characteristic analysis of Platax teira

OUYANG Yan^{1, 2, 3,},
PAN Jinmin^{2, 3},
XIAN Lin^{2, 3, 4},
LIU Baosuo^{2, 3, 4},
GUO Huayang^{2, 3, 4},
Zhu Tengfei^{2, 3, 4},
ZHANG Nan^{2, 3, 4},
ZHU Kecheng^{2, 3, 4},
ZHANG Dianchang^{2, 3, 4, ,}

1.
College of Fisheries and Life Science, Dalian Ocean University, Dalian 116023, China
2.
Sanya Tropical Fisheries Research Institutes, Sanya 572000, China
3.
South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences/Key Laboratory of South China Sea Fishery Resources Exploitation & Utilization, Ministry of Agriculture and Rural Affairs, Guangzhou 510300, China
4.
Guangdong Key Laboratory of Fishery Ecological Environment, Guangzhou 510300, China

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Received Date: May 22, 2024
Revised Date: May 27, 2024
Accepted Date: October 22, 2024
Available Online: October 28, 2024

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Abstract

Abstract

Platax teira has the characteristics of fast growth rate, delicious meat and high nutritional content, and its strange appearance, especially for young fish, makes it an ornamental fish, being one of the important potential fishes for the cage culture development in the South China Sea. Due to the lack of genomic information, most of the functional genes of P. teira have not been explored, which has become an important factor of restricting its genetic breeding. We utilized triple sequencing technology and assembly to obtain a high-quality genome map of P. teira on chromosome level, and obtained the basic biological information of P. teira genome sequence through genome annotation. The results show that the genome size of P. teira was 697.98 Mb, assembling into 24 chromosomes with an assembly rate of 99.26%. P. teira genome contained 177.79 Mb of repetitive sequences, accounting for 25.47% of the total genome and encoding 22 851 genes. Comparative genomic analysis with 11 other fish species reveals that P. teira shared the closest relationship with Cheilinus undulatus, and the differentiation time was about 82.89 Ma. Genes under positive selection in P. teira were enriched in pathways related to ion channels and cardiac function, while the expanded gene families were enriched in pathways related to olfactory transmission and nitrogen metabolism, which reveals its survival, adaptation basis and ecological adaptation strategies in specific environment.
- Platax teira,
- Chromosome,
- Genome,
- Comparative genomics,
- Ephippidae

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