草鱼α-淀粉酶基因5′侧翼序列克隆与分析

Cloning and analysis of 5′ flanking sequence of α-amylase gene from Ctenopharyngodon idellus

  • 摘要: 应用PCR和Genome Walking技术克隆获得长度为168 bp的草鱼(Ctenopharyngodon idellus)α-淀粉酶基因外显子Ⅰ序列和2 063 bp的5′侧翼序列。将草鱼α-淀粉酶基因外显子Ⅰ序列与已知几种鱼类α-淀粉酶基因外显子Ⅰ序列比对,相似度为68%~86%。将草鱼α-淀粉酶基因5′侧翼序列进行生物信息学分析,确定了其转录起始区域及转录起始位点(TSS);在TSS上游30 bp处有1个TATA-box,-58 bp处有CCAAT-box;在5′侧翼序列中还发现有GATA-1、OCT-1、GR、HNF-3、AP1和SP1等转录因子结合位点。草鱼α-淀粉酶基因5′侧翼序列的克隆,为进一步研究不同食性鱼类α-淀粉酶基因侧翼序列的差异、鱼类α-淀粉酶基因的表达、功能及调控机理奠定基础。

     

    Abstract: PCR and Genome Walking methods were applied to obtain a 168 bp α-amylase gene exon Ⅰ sequence and a 2 063 bp α-amylase gene 5′ flanking sequence from grass carp (Ctenopharyngodon idellus). The sequence alignment of α-amylase gene exon Ⅰ between grass carp and other fishes showed that the similarity was 68%~86%. The sequence analysis of α-amylase gene 5′ flanking sequence of grass carp confirmed a transcription initiation region and a transcriptional start site (TSS). There were a TATA-box at 30 bp and a CAAT-box at -58 bp. There were some transcriptional factor binding sites in the α-amylase gene 5′ flanking sequence, such as GATA-1, OCT-1, GR, HNF-3, AP1 and SP1. The α-amylase gene 5′ flanking sequence of grass carp was cloned successfully, which provides references for studies on differences of α-amylase gene 5′ flanking sequence between different feeding fishes, as well as on the expression, function and regulation mechanism of α-amylase gene in fishes.

     

/

返回文章
返回