基于RPA-CRISPR/Cas12a的神经坏死病毒快速检测方法建立

A rapid RPA-CRISPR/Cas12a approach for detecting red spotted grouper nervous necrosis virus

  • 摘要: 赤点石斑鱼神经坏死病毒 (Red spotted grouper nervous necrosis virus, RGNNV) 是危害中国海水养殖鱼类的主要病原体之一,尽早检出RGNNV是防控该病毒感染和减少养殖损失的关键措施。为建立快速检测RGNNV的方法,将重组酶聚合酶扩增 (Recombinase polymerase amplification, RPA) 技术与CRISPR/Cas12a (CRISPR,成簇规律间隔短回文重复序列;Cas12a,CRISPR相关蛋白) 检测系统相结合,通过设计和筛选RPA引物与crRNA (CRISPR RNA),优化RPA反应条件与CRISPR/Cas12a检测体系,评估该方法的灵敏度与特异性。同时,对临床石斑鱼样本进行检测,并与行业标准《SC/T 7216—2022 鱼类病毒性神经坏死病诊断方法》中规定的qPCR法进行一致性比较。结果显示,该检测方法最短可在45 min内得到结果,灵敏度为1.5×101 拷贝·µL−1,检测特异性良好,实际样本检测与行标qPCR法对比符合率为100%。研究建立的RPA-CRISPR/Cas12a-RGNNV检测方法具有快速、便捷、高灵敏度、强特异性和可视化检测结果等特点,为RGNNV的现场快速检测提供了新的技术手段。

     

    Abstract: Red spotted grouper nervous necrosis virus (RGNNV) is one of the most significant pathogens threatening marine fish farming in China, so early detection of RGNNV is a critical measure for preventing viral infection and reducing aquaculture losses. To develop a rapid RGNNV detection method, we developed a rapid visual detection method by integrating recombinase polymerase amplification (RPA) with the CRISPR/Cas12a system. Besides, we designed specific RPA primers and crRNA, then optimized both RPA reaction conditions and CRISPR/Cas12a detection parameters. The method's sensitivity and specificity were systematically evaluated through clinical testing of 20 suspected-infected grouper samples, with comparison to the standardized qPCR method (SC/T 7216—2022). Results show a detection limit of 1.5×10¹ copies·µL−1 and complete concordance with qPCR findings. The established RPA-CRISPR/Cas12a method demonstrates rapid detection, high sensitivity, excellent specificity, and visual interpretability, providing an efficient field-deployable solution for RGNNV surveillance in aquaculture operation.

     

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