尖翅燕鱼染色体水平基因组与特征分析

Chromosome-level genome and characteristic analysis of Platax teira

  • 摘要: 尖翅燕鱼 (Platax teira) 具有生长速度快、肉质鲜美、营养价值高等特点,其外形奇特,尤其幼鱼更为特殊,可作为观赏鱼,是南海发展网箱养殖的重要潜力鱼类之一。由于目前缺乏尖翅燕鱼的基因组信息,其多数功能基因未被挖掘,已成为制约其遗传育种的重要因素。运用三代测序技术和组装获得染色体水平的尖翅燕鱼高质量基因组图谱,通过基因组注释获得尖翅燕鱼基因组序列的基本生物学信息。结果显示,尖翅燕鱼基因组大小为697.98 Mb,Hi-C挂载至24条染色体,挂载率为99.26%,含重复序列177.79 Mb,占整个基因组的25.47%,注释到22 851个蛋白编码基因。系统进化分析显示尖翅燕鱼与波纹唇鱼 (Cheilinus undulatus) 亲缘关系最近,分化时间距今约82.89 Ma。正选择基因主要富集在与离子通道和心脏功能有关的通路中,扩张的基因家族主要富集在嗅觉传导和氮代谢通路上,揭示了其在特定环境中的生存、适应依据和生态适应策略。

     

    Abstract: Platax teira has the characteristics of fast growth rate, delicious meat and high nutritional content, and its strange appearance, especially for young fish, makes it an ornamental fish, being one of the important potential fishes for the cage culture development in the South China Sea. Due to the lack of genomic information, most of the functional genes of P. teira have not been explored, which has become an important factor of restricting its genetic breeding. We utilized triple sequencing technology and assembly to obtain a high-quality genome map of P. teira on chromosome level, and obtained the basic biological information of P. teira genome sequence through genome annotation. The results show that the genome size of P. teira was 697.98 Mb, assembling into 24 chromosomes with an assembly rate of 99.26%. P. teira genome contained 177.79 Mb of repetitive sequences, accounting for 25.47% of the total genome and encoding 22 851 genes. Comparative genomic analysis with 11 other fish species reveals that P. teira shared the closest relationship with Cheilinus undulatus, and the differentiation time was about 82.89 Ma. Genes under positive selection in P. teira were enriched in pathways related to ion channels and cardiac function, while the expanded gene families were enriched in pathways related to olfactory transmission and nitrogen metabolism, which reveals its survival, adaptation basis and ecological adaptation strategies in specific environment.

     

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