大口黑鲈HSC70-1基因多态性及其双倍型与生长性状的关联分析

Association analysis of SNPs and diplotype of HSC70-1 gene with growth traits in largemouth bass (Micropterus salmoides)

  • 摘要: 为了探讨HSC70-1基因对大口黑鲈(Micropterus salmoides)生长性状的影响作用,开发与生长性状相关的分子标记,该研究采用PCR技术扩增得到HSC70-1基因的cDNA和DNA全序列,编码区cDNA序列长1 953 bp,编码650个氨基酸,其DNA全序列长3 390 bp,包含8个外显子和7个内含子。采用直接测序法在该基因上筛选到4个单核苷酸多态性(SNP)位点,分别位于核苷酸序列中的第821、第1 105、第1 200和第2 804碱基处,且处于内含子上。SNP标记与性状的关联分析结果表明,C-821G位点上CC基因型个体的体质量和全长均显著高于CG和GG基因型(P<0.05)。A-2804T位点上TT基因型个体的体质量和全长均显著高于AT和AA基因型(P<0.05)。其他位点不同基因型个体间的生长性状均不存在显著差异(P>0.05)。通过合并基因型发现,双倍型D1 (CC−−CCTT)的各个生长性状表现最优,在体高和全长上显著高于D5。C-821G、A-2804T和D1与生长性状显著相关,可作为大口黑鲈分子标记辅助育种的候选标记。

     

    Abstract: In order to explore the effects of HSC70-1 gene on growth traits of largemouth bass (Micropterus salmoides) and develop growth-related SNPs, we obtained the cDNA of coding region and the complete sequence of HSC70-1 gene by PCR amplification. The encoding region cDNA sequence of HSC70-1 gene was 1 953 bp, encoding 650 amino acids. Its complete sequence was 3 390 bp in length, consisting of 8 exons and 7 introns. We screened four SNPs (at 821, 1 105, 1 200 and 2 804 bp on the introns) by direct sequencing, and found that the individuals with CC genotype of C-821G site had significantly higher values of body mass or total length than those with CG or GG genotypes (P<0.05). At the position of A-2804T, the individuals with TT genotype had significantly higher values of body mass or total length than those with AT or AA genotypes (P<0.05). The other two SNP loci were not significantly correlated with growth traits (P>0.05). The optical combined genotype of HSC70-1 gene was D1 (CC--CCTT), which had significantly higher values of body height or total length than those with D5. The growth-related C-821G, A-2804T and D1 can be useful candidate molecular markers for largemouth bass molecular marker-assisted selection.

     

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